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ONLINE COURSE – Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM06) This course will be delivered live
8 June 2020 - 11 June 2020£460.00
This course will now be delivered live by video link in light of travel restrictions due to the COVID-19 (Coronavirus) outbreak.
This is a ‘LIVE COURSE’ – the instructor will be delivering lectures and coaching attendees through the accompanying computer practical’s via video link, a good internet connection is essential.
TIME ZONE – Western European Time – however all sessions will be recorded and made available allowing attendees from different time zones to follow a day behind with an additional 1/2 days support after the official course finish date (please email firstname.lastname@example.org for full details or to discuss how we can accommodate you).
This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. This course will cover the concepts, technical background and use of stable isotope mixing models (SIMMs) with a particular focus on running them in R. Recently SIMMs have become a very popular tool for quantifying food webs and thus the diet of predators and prey in an ecosystem. Starting with only basic understanding of statistical models, we will cover the do’s and don’ts of using SIMMs with a particular focus on the widely used package SIAR and the more advanced MixSIAR. Participants will be taught some of the advanced features of these packages, which will enable them to produce a richer class of output, and are encouraged to bring their own data sets and problems to study during the round-table discussions.
The course is aimed at biologists with a basic to moderate knowledge in R. The course is aimed at anyone (academic or industry) who research is heavily reliant on analysing stable isotope data. There is a strong association with data on food webs and trophic relationships, but the tools learned can be applied to other systems.
Venue – Delivered remotely
Time zone – Western European Time
Availability – 30 places
Duration – 4 days
Contact hours – Approx. 28 hours
ECT’s – Equal to 3 ECT’s
Language – English
PLEASE READ – CANCELLATION POLICY: Cancellations are accepted up to 28 days before the course start date subject to a 25% cancellation fee. Cancellations later than this may be considered, contact email@example.com. Failure to attend will result in the full cost of the course being charged. In the unfortunate event that a course is cancelled due to unforeseen circumstances a full refund of the course fees will be credited.
A mixture of lectures and hands-on practicals. Data sets for computer practicals will be provided by the instructors, but participants are welcome to bring their own data.
Assumed quantitative knowledge
A basic understanding of statistical concepts. Such as regression modelling and generalised linear models. Some understanding of Bayesian Statistics is recommended but will be covered during the introductory sessions.
Assumed computer background
Familiarity with R. Ability to import/export data, manipulate data frames, fit basic statistical models & generate simple exploratory and diagnostic plots.
Equipment and software requirements
A laptop/personal computer with a working version or R and RStudio installed. R and RStudio are supported by both PC and MAC and can be downloaded for free by following these links.
UNSURE ABOUT SUITABLILITY THEN PLEASE ASK firstname.lastname@example.org
Monday 8th – Classes from 09:30 to 17:30
Module 1: Introduction; why use a SIMM?
Module 2: An introduction to bayesian statistics.
Module 3: Differences between regression models and SIMMs.
Practical: Revision on using R to load data, create plots and fit statistical models.
Round table discussion: Understanding the output from a Bayesian model.
Tuesday 9th – Classes from 09:30 to 17:30
Understanding and using SIAR.
Module 4: Do’s and Don’ts of using SIAR.
Module 5: The statistical model behind SIAR.
Practical: Using SIAR for real-world data sets; reporting output; creating richer summaries and plots.
Round table discussion: Issues when using simple SIMMs.
Wednesday 10th – Classes from 09:30 to 17:30
SIBER and MixSIAR.
Module 6: Creating and understanding Stable Isotope Bayesian Ellipses (SIBER).
Module 7: What are the differences between SIAR and MixSIAR?
Practical: Using MixSIAR on real world data sets; benefits over SIAR.
Round table discussion: When to use which type of SIMM.
Thursday 11th – Classes from 09:30 to 17:30
Module 8: Using MixSIAR for complex data sets: time series and mixed effects models.
Module 9: Source grouping: when and how?
Module 10: Building your own SIMM with JAGS.
Practical: Running advanced SIMMs with JAGS.
Round table discussion: Bring your own data set.