Landscape genetic data analysis using R (LNDG04)
1 June 2020 - 5 June 2020£275.00 – £530.00
The term ‘landscape genetics’ has been applied studies that integrate ecological context and intervening landscape into population genetic analyses of contemporary processes such as gene flow and migration. This course will cover the basics of both quantitative landscape ecology and population genetics, focusing on how we develop and evaluate spatial/genetic analyses using the R platform.
This course is suitable for graduate students, postdoctoral researchers, and primary investigators interested in learning how to integrate landscape ecological and population genetic tools using the R software.
Venue – PR statistics head office, 53 Morrison Street, Glasgow, G5 8LB – Google map
Availability – 24 places
Duration – 5 days
Contact hours – Approx. 35 hours
ECT’s – Equal to 3 ECT’s
Language – English
We offer COURSE ONLY and ACCOMMODATION PACKAGES;
• COURSE ONLY – Includes lunch and refreshments.
• ACCOMMODATION PACKAGE (to be purchased in addition to the course only option) – Includes breakfast, lunch, welcome dinner Monday evening, farewell dinner Thursday evening, refreshments and accommodation. Self-catering facilities are available in the accommodation. Accommodation is approximately a 6-minute walk from the PR statistics head office. Accommodation is multiple occupancy (max 3-4 people) single sex en-suite rooms. Arrival Sunday 1st June (after 5pm) and departure Friday 5th June (accommodation must be vacated by 9am). An additional nights accommodation can be purchased, departure 9am Saturday morning email for details.
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Cancellation policy: Cancellations are accepted up to 28 days before the course start date subject to a 25% cancellation fee. Cancellations later than this may be considered, contact firstname.lastname@example.org Failure to attend will result in the full cost of the course being charged. In the unfortunate event that PRstatistics must cancel this course due to unforeseen circumstances a full refund for the course will be credited. However PRstatistics cannot be held responsible for any travel fees, accommodation or other expenses incurred to you as a result of the cancellation.
There will be morning lectures based on the modules outlined in the course timetable. In the afternoon there will be practicals based on the topics covered that morning. Data sets for computer practicals will be provided by the instructors, but participants are welcome to bring their own data.
Assumed quantitative knowledge
A basic understanding of statistical concepts. Specifically, generalised linear regression models, statistical significance, hypothesis testing.
Assumed computer background
Familiarity with R. Ability to import/export data, manipulate data frames, fit basic statistical models & generate simple exploratory and diagnostic plots.
Equipment and software requirements
A laptop/personal computer with a working version or R and RStudio installed. R and RStudio are supported by both PC and MAC and can be downloaded for free by following these links.
It is essential that you come with all necessary software and packages already installed (you will be sent a list of packages prior to the course) internet access may not always be available.
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Meet at 43 Cook Street, Glasgow, G5 8JN at approx. 17:00 onwards
Monday 1st – Classes from 09:30 to 17:30
Module 1: Spatial & Ecological Data.
Installation & configuring R & RStudio
Acquiring spatial data, projections, and visualization
Vector and raster data
Tuesday 2nd – Classes from 09:30 to 17:30
Module 2: Genetic markers and basic analyses
Genetic markers and sampling
Genetic distance, diversity, and structure
Ordination techniques based upon genetic markers
Wednesday 3rd – Classes from 09:30 to 17:30
Module 3: Integrating spatial and genetic data
Barrier detection & population division
Mantel and distance regressions
Remote sensing – LiDAR and Hyperspectral data
Thursday 4th – Classes from 09:00 to 17:00
Module 4: Integrating spatial and genetic data
PCMN & Redundancy
Friday 5th – Classes from 09:30 to 16:00
Module 5: Adaptive Genetic Variance
Outliers & gradients
Quantitative genetics, why we should care.
The instructors were excellent and clearly were the reasons for my previous comments. They both combined a deep understanding of statistics and ecology at the same level.Any questions or queries I’ve had, were thus first answered with an ecological point of view and then translated into statistical consideration thereby making much more sense on both side.In addition the course was very well organised, the course director and the two instructors were very friendly as well as professional. On the top of learning many useful things, I’ve also had a very good time during the week there.” Clement Garcia,
Spatial ecologist, Centre For Environment, Fisheries & Aquaculture Science (CEFAS), England
(Attended ADVR course)